【平台简介】

PANDA is a comprehensive and flexib tool for quantitative proteomics data analysis, which is developed based on our solid foundations in quantitative proteomics for years. Several novelties have been implemented in it. First, we implement the advantage algorithms of LFQuant (Proteomics 2012, 12, (23-24), 3475-84) and SILVER (Bioinformatics 2014, 30, (4), 586-7) into PANDA. Second, we consider the state-of-art concept of quantification reliability in this quantitative workflow. On the levels of spectra, peptides and proteins, PANDA works out a few quantitative filters and new scores for quantification confidence. Third, PANDA is designed for processing proteomics big data in parallel.

【平台链接】

https://sourceforge.net/projects/panda-tools/files/

【文献索引】

Chang C, et al. PANDA: A comprehensive and flexible tool for proteomics data quantitative analysis. Bioinformatics 2019, 35, (5), 898-900.

Chang C, et al. PANDA-view: An easy-to-use tool for statistical analysis and visualization of quantitative proteomics data. Bioinformatics, 2018, 34, (20), 3594-3596.

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